What is STREAM

STREAM(Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data), is an interactive pipeline capable of disentangling and visualizing complex branching trajectories from both single-cell transcriptomic and epigenomic data. It also allows for automatic developmental-trajectory-related marker gene discovery and visualization.

STREAM is available as user-friendly open source software and can be used interactively as a web-application at or as a standalone command-line tool with Docker


What can I do with STREAM

STREAM can be used in two different ways:

1. An interactive database focused on single-cell trajectory visualization for several published studies.

2. A computational trajectory inference tool:


1.Precomputed results:

2.Compute on your own data:

Download current analysis