STREAM is an interactive computational pipeline for reconstructing complex celluar developmental trajectories from sc-qPCR, scRNA-seq or scATAC-seq data

STREAM is now published in Nature Communications!


Visualize own and precomputed datasets


Run STREAM on your single-cell data


Learn how to use STREAM

Credits: H Chen, L Albergante, JY Hsu, CA Lareau, GL Bosco, J Guan, S Zhou, AN Gorban, DE Bauer, MJ Aryee, DM Langenau, A Zinovyev, JD Buenrostro, GC Yuan, L Pinello

* STREAM website is a streamlined analysis tool based on our bioconda package 'stream'. It doesn't support all the functions available in 'stream' package. To get a more comprehensive analysis, please check out our bioconda package 'stream'